Smith, Timothy M., Sherman, Craig D.H., Cumming, Erin E., York, Paul H., and Jarvis, Jessie C. (2022) Size matters: variations in seagrass seed size at local scales affects seed performance. Hydrobiologia, 849. pp. 2335-2352.

Reason, Carissa, York, Paul, and Rasheed, Michael (2022) Seagrass habitat of Cairns Harbour and Trinity Inlet: Annual Monitoring Report and Cairns Shipping Development Project Monitoring Report 2021. Report. TropWATER, Cairns, QLD, Australia. (Unpublished)

Reason, Carissa, York, Paul, and Rasheed, Michael (2022) Seagrass habitat of Mourilyan Harbour: Annual Monitoring Report – 2021. Report. TropWATER, Cairns, QLD, Australia. (Unpublished)

Duarte de Paula Costa, Micheli, Lovelock, Catherine E., Waltham, Nathan J., Young, Mary, Adame, Maria F., Bryant, Catherine V., Butler, Don, Green, David, Rasheed, Michael A., Salinas, Cristian, Serrano, Oscar, York, Paul H., Whitt, Ashley A., and Macreadie, Peter I. (2021) Current and future carbon stocks in coastal wetlands within the Great Barrier Reef catchments. Global Change Biology, 27 (14). pp. 3257-3271.

Trevathan-tackett, Stacey M., Kepfer-Rojas, Sebastian, Engelen, Aschwin H., York, Paul, Ola, Anne, Li, Jinquan, Kelleway, Jeffrey J., Jinks, Kristin I., Jackson, Emma L., Adame, Maria Fernanda, Pendall, Elise, Lovelock, Catherine E., Connolly, Rod M., Watson, Anne, Visby, Inger, Trethowan, Allison, Taylor, Ben, Roberts, Tessa N.B., Petch, Jane, Farrington, Lachlan, Djukic, Ika, and Macreadie, Peter I. (2021) Ecosystem type drives tea litter decomposition and associated prokaryotic microbiome communities in freshwater and coastal wetlands at a continental scale. Science of the Total Environment, 782. 146819.

York, Paul, Van de Wetering, Chris, and Rasheed, M.A. (2021) Hay Point Coal Terminal Marine macrophyte assessment for potential mooring sites – October 2020. Report. TropWATER, Cairns, QLD, Australia.

Scott, Abigail L., York, Paul H., and Rasheed, Michael A. (2021) Herbivory has a major influence on structure and condition of a Great Barrier Reef subtropical seagrass meadow. Estuaries and Coasts, 44. pp. 506-521.

Tol, Samantha J., Jarvis, Jessie C., York, Paul H., Congdon, Bradley C., and Coles, Robert G. (2021) Mutualistic relationships in marine angiosperms: enhanced germination of seeds by mega-herbivores. Biotropica, 53 (6). pp. 1535-1545.

Scott, Abigail L., York, Paul H., and Rasheed, Michael A. (2021) Spatial and temporal patterns in macroherbivore grazing in a multi-species tropical seagrass meadow of the Great Barrier Reef. Diversity, 13 (1). 12.

Scott, Abigail L., York, Paul H., Macreadie, Peter I., and Rasheed, Michael A. (2021) Spatial and temporal variability of green turtle and dugong herbivory in seagrass meadows of the southern Great Barrier Reef (GBR). Marine Ecology Progress Series, 667. pp. 225-231.

Jackson, Emma L., Smith, Timothy M., York, Paul H., Nielsen, Jesper, Irving, Andrew D., and Sherman, Craig D. H. (2021) An assessment of the seascape genetic structure and hydrodynamic connectivity for sub-tropical seagrass restoration. Restoration Ecology, 29 (1). e13269.

Whalan, Mathew A., Whippo, Ross D.B., Stachowicz, John J., York, Paul H., Aiello, Erin, Alcoverro, Teresa, Altieri, Andrew H., Bertolini, Camilla, Benedetti-Cecchi, Lisandro, Bresch, Midoli, Bulleri, Fabio, Carnell, Paul E., Cimon, Stéphanie, Connolly, Rod M., Cusson, Mathieu, Diskin, Meredith S., D'Souza, Elrika, Flores, Augusto A.V., Fodrie, F. Joel, Galloway, Aaron W.E., Gaskins, Leo C., Graham, Olivia J., Hanley, Torrance C., Henderson, Christopher J., Hereu, Clara M., Hessing-Lewis, Margot, Hovel, Kevin A., Hughes, Brent B., Hughes, A. Randall, Hultgren, Kristin M., Jänes, Holger, Janiak, Dean S., Johnston, Lane N., Jorgensen, Pablo, Kelaher, Brendan P., Kruschel, Claudia, Lanham, Brendan S., Lee, Kun-Seop, Lefcheck, Jonathan S., Lozano-Álvarez, Enrique, Macreadie, Peter I., Monteith, Zachary L., O'Connor, Nessa E., Olds, Andrew D., O'Leary, Jennifer K., Patrick, Christopher J., Pino, Oscar, Poore, Alistair G.B., Rasheed, Michael A., Raymond, Wendel W., Reiss, Katrin, Rhoades, O. Kennedy, Robinson, Max T., Ross, Paige G., Rossi, Francesca, Schlacher, Thomas A., Seemann, Janina, Silliman, Brian R., Smee, Delbert L., Thiel, Martin, Unsworth, Richard K.F., van Tussenbroek, Brigitta I., Vergés, Adriana, Yeager, Mallarie E., Yednock, Bree K., Ziegler, Shelby L., and Duffy, J. Emmett (2020) Climate drives the geography of marine consumption by changing predator communities. Proceedings of the National Academy of Sciences of the United States of America, 117 (45). pp. 28160-28166.

Scott, Abigail L., York, Paul H., and Rasheed, Michael A. (2020) Green turtle (Chelonia mydas) grazing plot formation creates structural changes in a multi-species Great Barrier Reef seagrass meadow. Marine Environmental Research, 162. 105183.

Ricart, Aurora M., York, Paul H., Bryant, Catherine V., Rasheed, Michael A., Ierodiaconou, Daniel, and Macreadie, Peter I. (2020) High variability of Blue Carbon storage in seagrass meadows at the estuary scale. Scientific Reports, 10. 5865.

Hoffmann, Luke, Edwards, Will, York, Paul H., and Rasheed, Michael A. (2020) Richness of primary producers and consumer abundance mediate epiphyte loads in a tropical seagrass system. Diversity, 12 (10). 384.

Jinks, Kristin I., Rasheed, Michael A., Brown, Christopher J., Olds, Andrew D., Schlacher, Thomas A., Sheaves, Marcus, York, Paul H., and Connolly, Rod M. (2020) Saltmarsh grass supports fishery food webs in subtropical Australian estuaries. Estuarine, Coastal and Shelf Science, 238. 106719.

Hayes, Matthew A., McClure, Eva C., York, Paul H., Jinks, Kristin I., Rasheed, Michael A., Sheaves, Marcus, and Connolly, Rod M. (2020) The differential importance of deep and shallow seagrass to Nekton assemblages of The Great Barrier Reef. Diversity, 12 (8). 292.

Jinks, Kristin I., Brown, Christopher J., Rasheed, Michael A., Scott, Abigail L., Sheaves, Marcus, York, Paul H., and Connolly, Rod M. (2019) Habitat complexity influences the structure of food webs in Great Barrier Reef seagrass meadows. Ecosphere, 10 (11). e02928.

Hays, Graeme C., Alcoverro, Teresa, Christianen, Marjolijn J.A., Duarte, Carlos M., Hamann, Mark, Macreadie, Peter I., Marsh, Helene D., Rasheed, Michael A., Thums, Michele, Unsworth, Richard K.F., York, Paul H., and Esteban, Nicole (2018) New tools to identify the location of seagrass meadows: marine grazers as habitat indicators. Frontiers in Marine Science, 5. 9.

York, Paul H., Macreadie, Peter I., and Rasheed, Michael A. (2018) Blue Carbon stocks of Great Barrier Reef deep-water seagrasses. Biology Letters, 14 (12). 20180529.

Schrameyer, Verena, York, Paul H., Chartrand, Katie, Ralph, Peter J., Kuhl, Michael, Brodersen, Kasper Elgetti, and Rasheed, Michael A. (2018) Contrasting impacts of light reduction on sediment biogeochemistry in deep- and shallow-water tropical seagrass assemblages (Green Island, Great Barrier Reef). Marine Environmental Research, 136. pp. 38-47.

York, Paul H., Hyndes, Glenn A., Bishop, Melanie J., and Barnes, Richard S.K. (2018) Faunal assemblages of seagrass ecosystems. In: Larkum, Anthony W.D., Kendrick, Gary A., and Ralph, Peter J., (eds.) Seagrasses of Australia: Structure, Ecology and Conservation. Springer, Cham, Switzerland, pp. 541-588.

Wu, Paul Pao-Yen, McMahon, Kathryn, Rasheed, Michael A., Kendrick, Gary A., York, Paul H., Chartrand, Kathryn, Caley, M. Julian, and Mengersen, Kerrie (2018) Managing seagrass resilience under cumulative dredging affecting light: predicting risk using dynamic Bayesian networks. Journal of Applied Ecology, 55 (3). pp. 1339-1350.

Smith, Timothy M., York, Paul H., Broitman, Bernardo R., Thiel, Martin, Hays, Graeme C., van Sebille, Erik, Putman, Nathan F., Macreadie, Peter I., and Sherman, Craig D.H. (2018) Rare long-distance dispersal of a marine angiosperm across the Pacific Ocean. Global Ecology and Biogeography, 27 (4). pp. 487-496.

Sherman, Craig C.D., Smith, Timothy M., York, Paul H., Jarvis, Jessie C., Ruiz-Montoya, Leonardo, and Kendrick, Gary A. (2018) Reproductive, dispersal and recruitment strategies in Australian seagrasses. In: Larkum, Anthony A.W., Kendrick, Gary A., and Ralph, Peter J., (eds.) Seagrasses of Australia: Structure, Ecology and Conservation. Springer, Cham, Switzerland, pp. 213-256.

Scott, Abigail L., York, Paul H., Duncan, Clare, Macreadie, Peter I., Connolly, Rod M., Ellis, Megan T., Jarvis, Jessie C., Jinks, Kristin I., Marsh, Helene, and Rasheed, Michael A. (2018) The role of herbivory in structuring tropical seagrass ecosystem service delivery. Frontiers in Plant Science, 9. 127.

Wu, Paul Pao-Yen, Mengersen, Kerrie, McMahon, Kathryn, Kendrick, Gary A., Chartrand, Katie, York, Paul H., Rasheed, Michael A., and Caley, M. Julian (2017) Timing anthropogenic stressors to mitigate their impact on marine ecosystem resilience. Nature Communications, 8. 1263.

Clarke, David A., York, Paul H., Rasheed, Michael A., and Northfield, Tobin D. (2017) Does biodiversity–ecosystem function literature neglect tropical ecosystems? Trends in Ecology & Evolution, 32 (5). pp. 320-323.

Cumming, Erin, Jarvis, Jessie C., Sherman, Craig, York, Paul H., and Smith, Timothy M. (2017) Seed germination in a southern Australian temperate seagrass. PeerJ, 5. e3114. pp. 1-19.

Clarke, David A., York, Paul H., Rasheed, Michael A., and Northfield, Tobin D. (2017) Identifying areas of need in tropical research: a reply to Stroud and Feeley. Trends in Ecology & Evolution, 32 (9). p. 628.

York, Paul H., Smith, Timothy M., Coles, Rob G., McKenna, Skye A., Connolly, Rod M., Irving, Andrew D., Jackson, Emma L., McMahon, Kathryn, Runcie, John W., Sherman, Craig D.H., Sullivan, Brooke K., Trevathan-Tackett, Stacy M., Brodersen, Kasper E., Carter, Alex B., Ewers, Carolyn J., Lavery, Paul S., Roelfsema, Chris M., Sinclair, Elizabeth A., Strydom, Simone, Tanner, Jason E., van Dijk, Kor-jent, Warry, Fiona Y., Waycott, Michelle, and Whitehead, Sam (2017) Identifying knowledge gaps in seagrass research and management: an Australian perspective. Marine Environmental Research, 127. pp. 163-172.

Tol, Samantha J., Jarvis, Jessie C., York, Paul H., Grech, Alana, Congdon, Bradley C., and Coles, Robert G. (2017) Long distance biotic dispersal of tropical seagrass seeds by marine mega-herbivores. Scientific Reports, 7. 4458. pp. 1-8.

Waltham, Nathan, York, Paul, McKenna, Skye, Petus, Caroline, Devlin, Michelle, Rasheed, Michael, Campbell, Sean, Whinney, James, and Kane, Kevin (2017) Long term ambient water quality monitoring to support port management in the Great Barrier Reef World Heritage Area. In: Proceedings of the Australasian Coasts & Ports 2017 Conference. pp. 1125-1130. From: Australasian Coasts & Ports 2017 Conference: working with nature, 21-23 June 2017, Cairns, QLD, Australia.

Serrano, Oscar, Lavery, Paul S., Duarte, Carlos M., Kendrick, Gary A., Calafat, Antoni, York, Paul H., Steven, Andy, and Macreadie, Peter I. (2016) Can mud (silt and clay) concentration be used to predict soil organic carbon content within seagrass ecosystems? Biogeosciences, 13. pp. 4915-4926.

Smith, Timothy M., York, Paul H., Macreadie, Peter I., Keough, Michael J., Ross, D. Jeff, and Sherman, Craig D.H. (2016) Spatial variation in reproductive effort of a southern Australian seagrass. Marine Environmental Research, 120. pp. 214-224.

Connolly, Rod, Dunn, Ryan, Jackson, Emma, Kristensen, Erik, Maxwell, Paul, Pearson, Ryan, Rasheed, Michael, and York, Paul (2016) Gold Coast Seagrass Sensitivities and Resilience (SRMP-003). Report. Griffith University, Gold Coast, QLD, Australia.

Reason, Carissa, York, Paul, Scott, Emma, McKenna, Skye, and Rasheed, Michael (2016) Seagrass Habitat of Mourilyan Harbour: annual monitoring report: 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

York, Paul H., Reason, Carissa, Scott, Emma, Sankey, Tonia, and Rasheed, Michael A. (2016) Seagrass Habitat of Cairns Harbour and Trinity Inlet: annual monitoring report 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Smith, Timothy M., York, Paul H., Macreadie, Peter I., Keough, Michael J., Ross, D. Jeff, and Sherman, Craig D.H. (2016) Recovery pathways from small scale disturbance in a temperate Australian seagrass. Marine Ecology Progress Series, 542. pp. 97-108.

Sherman, Craig D.H., York, Paul H., Smith, Timothy M., and Macreadie, Peter I. (2016) Fine-scale patterns of genetic variation in a widespread clonal seagrass species. Marine Biology, 163 (4). 82.

Thomson, Alexandra C.G., York, Paul H., Smith, Tim M., Sherman, Craig D.H., Booth, David J., Keough, Michael J., Ross, D. Jeff, and Macreadie, Peter I. (2016) Response to "Comment on 'Seagrass viviparous propagules as a potential long-distance dispersal mechanism' by A. C. G. Thomson et al". Estuaries and Coasts, 39. pp. 875-876.

Schliep, M., Pernice, M., Sinutok, S., Bryant, C.V., York, P.H., Rasheed, M.A., and Ralph, P.J. (2015) Evaluation of reference genes for RT-QPCR studies in the seagrass Zostera muelleri exposed to light limitation. Scientific Reports, 5. 17051. pp. 1-11.

Waltham, Nathan, McKenna, Skye, York, Paul, Devlin, Michelle, Campbell, Sean, Rasheed, Michael, Da Silva, Eduardo, Petus, Caroline, and Ridd, Peter (2015) Port of Mackay and Hay Point Ambient Marine Water Quality Monitoring Program (July 2014 to July 2015). Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Ricart, Aurora M., York, Paul H., Rasheed, Michael A., Pérez, Marta, Romero, Javier, Bryant, Catherine V., and Macreadie, Peter I. (2015) Variability of sedimentary organic carbon in patchy seagrass landscapes. Marine Pollution Bulletin, 100 (1). pp. 476-482.

York, Paul H., Carter, Alex B., Chartrand, Kathyrn, Sankey, Tonia, Wells, Linda, and Rasheed, Michael A. (2015) Dynamics of a deep-water seagrass population on the Great Barrier Reef: annual occurrence and response to a major dredging program. Scientific Reports, 5. 13167. pp. 1-9.

Macreadie, Peter, York, Paul, Rasheed, Michael, Bryant, Catherine, Ricart, Aurora, Nielsen, Daniel, Fontes, Maria, Atwood, Tricia, Seymour, Justin, Petrou, Katherina, Kelleway, Jeffrey, Thomson, Alexandra, Trevathan-Tackett, Stacey, Connolly, Rod, and Ralph, Peter (2015) Hot spots and hot moments in seagrass 'blue carbon' science. In: Abstracts from 52nd Australian Marine Science Association Conference. p. 206. From: AMSA 2015: Australian Marine Science Association: Estuaries to Oceans, 5-9 July 2015, Geelong, Victoria.

Coles, Robert G., Rasheed, Michael A., McKenzie, Len J., Grech, Alana, York, Paul H., Sheaves, Marcus, McKenna, Skye, and Bryant, Catherine (2015) The Great Barrier Reef World Heritage Area seagrasses: managing this iconic Australian ecosystem resource for the future. Estuarine, Coastal and Shelf Science , 153. A1-A12.

Carter, Alex, Bryant, Catherine, Jarvis, Jessie, York, Paul, and Rasheed, Michael (2015) Developing thresholds and indicators of seagrass meadow condition using long-term monitoring data. In: Abstracts from the 52nd Australian Marine Science Association Annual Conference. p. 90. From: AMSA 2015: 52nd Australian Marine Science Association Annual Conference, 5-9 July 2015, Geelong, VIC, Australia.

Pernice, M., Schliep, M., Szabo, M., Rasheed, M., Bryant, C., York, P., Chartrand, K., Petrou, K., and Ralph, P. (2015) Development of a molecular biology tool kit to monitor dredging-related light stress in the seagrass Zostera muelleri ssp. capricorni in Port Curtis. Report. TropWATER, Cairns, QLD, Australia.

McKenna, Skye, Rasheed, Michael, Coles, Robert, Carter, Alex, Jarvis, Jessie, York, Paul, Davies, Jaclyn, and Bryant, Catherine (2015) Reaping the benefits (and costs) of monitoring seagrass in Queensland Ports. In: Abstracts from the 52nd Australian Marine Science Association Annual Conference. p. 215. From: AMSA 2015: 52nd Australian Marine Science Association Annual Conference, 5-9 July 2015, Geelong, VIC, Australia.

Thomson, Alexandra C.G., York, Paul H., Smith, Timothy M., Sherman, Craig D.H., Booth, David J., Keough, Michael J., Ross, D. Jeff, and Macreadie, Peter I. (2015) Seagrass viviparous propagules as a potential long-distance dispersal mechanism. Estuaries and Coasts, 38. pp. 927-940.

Rasheed, Michael, York, Paul, Bryant, Catherine, McKenna, Skye, Chartrand, Katie, and Coles, Rob (2014) Deep-water seagrasses in the tropics: resilience, recovery and establishing thresholds and drivers of change. In: The 11th International Seagrass Biology Workshop: declining seagrasses in a changing world: abstracts. p. 22. From: The 11th International Seagrass Biology Workshop: declining seagrasses in a changing world, 6 - 10 November 2014, Sanya, China.

Carter, A.B., Taylor, H.A., McKenna, S.A., York, P.Y., and Rasheed, M.A. (2014) The effects of climate on seagrasses in the Torres Strait: 2011-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

York, P.H., Davies, J.N., and Rasheed, M.A. (2014) Long-term seagrass monitoring in the Port of Mourilyan: 2013. Report. TropWATER, James Cook University, Cairns.

Macreadie, Peter I., York, Paul H., and Sherman, Craig D.H. (2014) Resilience of Zostera muelleri seagrass to small-scale disturbances: the relative importance of asexual versus sexual recovery. Ecology and Evolution, 4 (4). pp. 450-461.

Schliep, M., Rasheed, M., Bryant, C., Chartrand, K., York, P., Petrou, K., and Ralph, P. (2014) Development of a molecular biology toolkit to monitor dredging-related stress in Zostera muelleri ssp. capricorni in the Port of Gladstone: interim report. Report. James Cook University, Cairns, QLD, Australia.

Bryant, Catherine, Jarvis, Jessie, York, Paul, and Rasheed, Michael (2014) Gladstone Healthy Harbour Partnership Pilot Report Card. ISP011: seagrass final report. Report. TropWATER, Cairns, QLD, Australia.

Macreadie, Peter I., York, Paul H., Sherman, Craig D.H., Keough, Michael J., Ross, D. Jeff, Ricart, Aurora M., and Smith, Timothy M. (2014) No detectable impact of small‑scale disturbances on 'blue carbon' within seagrass beds. Marine Biology, 161 (12). pp. 2939-2944.

Carter, Alex, Taylor, Helen, McKenna, Skye, York, Paul, and Rasheed, Michael (2014) The effect of climate on seagass in the Torres Strait: 2011-2014. Report. TropWATER, Cairns, QLD, Australia.

York, Paul H., Gruber, Renee K., Hill, Ross, Ralph, Peter J., Booth, David J., and Macreadie, Peter I. (2013) Physiological and morphological responses of the temperate seagrass Zostera muelleri to multiple stressors: investigating the interactive effects of light and temperature. PLoS ONE, 8 (10). e76377. pp. 1-12.

Kelaher, Brendan P., Van Den Broek, James, York, Paul H., Bishop, Melanie J., and Booth, David J. (2013) Positive responses of a seagrass ecosystem to experimental nutrient enrichment. Marine Ecology Progress Series, 487. pp. 15-25.

Smith, Timothy M., York, Paul, Stanley, Annalise M., Macreadie, Peter, Keough, Michael J., Ross, D. Jeff, and Sherman, Craig D.H. (2013) Microsatellite primer development for the seagrass Zostera nigricaulis (Zosteraceae). Conservation Genetics Resources, 5 (3). pp. 607-610.

York, Paul H., Kelaher, Brendan P., Booth, David J., and Bishop, Melanie J. (2012) Trophic responses to nutrient enrichment in a temperate seagrass food chain. Marine Ecology Progress Series, 449. pp. 291-296.

Kelaher, Brendan P., Castilla, Juan Carlos, Prado, Luis, York, Paul, Schwindt, Evangelina, and Bortolus, Alejandro (2007) Spatial variation in molluscan assemblages from coralline turfs of Argentinean Patagonia. Journal of Molluscan Studies, 73 (2). pp. 139-146.

Bishop, Melanie J., Kelaher, Brendan P., Alquezar, Ralph, York, Paul H., Ralph, Peter J., and Skilbeck, C. Greg (2007) Trophic cul-de-sac, Pyrazus ebeninus, limits trophic transfer through an estuarine detritus-based food web. Oikos, 116 (3). pp. 427-438.

York, P.H., Booth, D.J., Glasby, T.M., and Pease, B.C. (2006) Fish assemblages in habitats dominated by Caulerpa taxifolia and native seagrasses in south-eastern Australia. Marine Ecology Progress Series, 312. pp. 223-234.

Bishop, Melanie J., Kelaher, Brendan P., Smith, Marcus P. Lincoln, York, Paul H., and Booth, David J. (2006) Ratio-dependent response of a temperate Australian estuarine system to sustained nitrogen loading. Oecologia, 149 (4). pp. 701-708.